Integrate Analysis System IAS

IAS puede automatizar los procesos manuales desde el inicio hasta el final de I+D.

IAS is not a replacement for every point tool. It is a web-based workflow layer that brings fragmented research data, analysis procedures, review records, and report creation into the same context.

  • Absorb format differences
  • Standardize analysis steps
  • Support collaborative review
Experiment-level integrationConnect imaging, NGS, flow, mass-spec, and molecular structure into one research decision.

IAS es una capa de flujo de trabajo entre herramientas puntuales y LIMS

IAS no sustituye las herramientas específicas de cada modalidad. Conecta datos de experimento, análisis, revisión e informes en una misma superficie de decisión.

  1. Connect

    Agrupar salidas de ensayos

    Organiza por experimento salidas de imagen, citometría, genómica, espectrometría de masas y estructura molecular.

  2. Analyze

    Analizar en un entorno

    Gestiona métodos de análisis específicos de cada modalidad en el mismo espacio de trabajo y reduce traspasos manuales.

  3. Link

    Conectar evidencia cruzada

    Une resultados de varios ensayos en una decisión de investigación para acelerar comparación e interpretación.

  4. Govern

    Crear salidas revisables

    Conecta historial de análisis, verificaciones e informes hacia resultados finales reproducibles.

Devolver los objetivos de búsqueda al diseño experimental

IAS no solo muestra resultados; organiza compuestos objetivo, fármacos candidatos, hipótesis, métricas y siguientes condiciones para que informen simulaciones y planes de laboratorio.

Además de mejorar análisis, interpretación e informes, IAS eleva la calidad del diseño experimental y acorta el ciclo desde la búsqueda de candidatos hasta la validación húmeda.

Target

Partir de compuestos y candidatos

Conecta contexto de enfermedad, datos existentes, imagen, ómicas e indicadores estructurales para definir eficacia, toxicidad y mecanismo a explorar.

Plan

Reflejar hallazgos en simulación y diseño

Devuelve condiciones prometedoras, grupos de comparación y parámetros de medición a la revisión in silico o al siguiente plan experimental.

Reduce

Reducir el esfuerzo de laboratorio húmedo

Descarta antes condiciones de menor potencial y concentra experimentos, comprobaciones y revisiones en las hipótesis relevantes.

NEW FEATURE

Now supports ChatGPT and LifeAnalytics' proprietary generative AI app

Helping researchers summarize, interpret, and draft reports from complex analysis results through natural language instructions.

LifeAnalytics IAS now supports ChatGPT and LifeAnalytics' proprietary generative AI application. Using research data, analysis history, experiment records, analysis summaries, and report context, IAS helps researchers summarize, interpret, create reports, and draft scientific manuscripts from complex life science analysis results.

IAS supports multiple analysis areas including image analysis, gene analysis, flow cytometry, mass spectrometry, molecular structure analysis, spatial multi-layer multi-omics analysis, and integrated analysis.

  • Summarize and interpret results using natural language
  • Organize multiple types of life science analysis data
  • Support report creation and manuscript draft preparation
Screen image introducing ChatGPT support for LifeAnalytics IAS

Implementación de cinco metodologías representativas de I+D y análisis integrado

IAS gestiona en la nube datos de imagen, citometría de flujo, secuenciación de nueva generación, estructura molecular y espectrometría de masas.

IAS analysis capabilities

Genome Analysis

Visualization, alignment, assembly, and annotation of DNA and protein sequences.

Mass Spectrometry

Acquisition, processing, and analysis of mass spectrometry data, including metabolomics.

Molecular Structure Analysis

High-accuracy prediction of 3D protein structure from amino acid sequences.

Integrated Analysis

AI-assisted discussion reports based on individual analysis results.

Imaging

Image analysis for cells and tissue sections, including 3D, Timelapse, HCS, and pathology.

Flow Cytometry

Flow cytometry analysis such as SPADE, U-MAP, and dot plots.

IAS specification details

IAS Specifications: Analysis Modes, AI Models, and Support Functions

Handle imaging, flow cytometry, genomics, mass spectrometry, molecular structure, and integrated analysis in one research workbench.

IAS is not a single image-analysis application or a collection of isolated point tools. It brings imaging, flow cytometry, genomics, mass spectrometry, molecular structure analysis, integrated analysis, and data management into one research workbench experience.

IAS AI output does not guarantee clinical diagnosis. Interpretation of pathology images, medical images, genomics, molecular structure, and mass-spec results should be combined with specialist review, raw-data inspection, standard methods, and external validation.

Workflow diagram showing the full IAS analysis-mode overviewWorkflow diagram

Analysis mode cards

Each card summarizes inputs, outputs, and review points at a practical evaluation level.

Diagram showing IAS analysis mode card structure

Imaging / DL-ML

Target data
Microscopy, pathology, cell, materials, animal time-series, and spatial omics images
Representative input
Microscopy, WSI, CT/MRI-like images, timelapse, 3D volume, spatial omics images
Main output
Segmentation, ROI analysis, tracking, quantification tables, pathology-support reports
Review points
Image quality, ROI settings, mask accuracy, positivity criteria, specialist review

FlowCyto

Target data
Flow cytometry and spectral cytometry
Representative input
FCS, panel metadata, compensation matrix, gate definitions
Main output
Compensation, QC, manual gates, clustering, UMAP/t-SNE, statistics
Review points
Compensation, channel names, QC exclusion rules, gate hierarchy, threshold history

Genomics

Target data
Sequence analysis, NGS, single-cell, CRISPR, multi-omics
Representative input
FASTA, FASTQ, BAM, VCF, H5AD, tabular data
Main output
QC, alignment, variants, single-cell clusters, annotations, reports
Review points
Genome build, QC, depth, population frequency, reference data, batch correction

MassSpec

Target data
MS, MSI, proteomics, metabolomics, lipidomics, DIA, targeted quant
Representative input
raw, mzML, mgf, ms2, wiff, peak tables, identification tables, quant tables
Main output
Peak detection, identification, quantification, database matching, MSI spatial analysis
Review points
QC, blank, batch correction, FDR, standards, retention time, MS/MS evidence

Molecular Structure

Target data
Structure prediction, docking, molecular dynamics, function inference
Representative input
Sequences, PDB, mmCIF, ligands, complexes, conditions
Main output
Predicted and public structures, docking candidates, MD analysis, validation reports
Review points
Confidence, pLDDT/PAE, protonation, box, charge, force field, experimental structures

Integrate

Target data
Cross-mode integration and decision support
Representative input
Mode result tables, HDF5, JSON, CSV, sample IDs
Main output
ID mapping, statistical integration, cross-modal relations, Gen Report
Review points
Sample ID mapping, missingness, units, batches, correlation versus causation

DB Manage / Sample DB

Target data
Data management, metadata, experiment history
Representative input
Uploaded files, experiment names, sample tags, analysis history
Main output
Input history, file references, mode estimation, re-analysis paths
Review points
Sample ID consistency, history, auditability, re-analysis readiness

Analysis-mode details and review points

Long model inventories are grouped by purpose so readers can see how each model is used and what should be checked before interpreting outputs.

Imaging and DL/ML model useMore details

IAS imaging modes cover Tissue, Cell, Material, Semicon, Animal, and ML workflows so teams can choose models by purpose.

Tissue

TissueNet, Foxp3 Spatial, Foxp3 DAB Spatial, Ki67-Br, Pathology, CT/MRI Segment, Spatial Omics, TissueNT2, Thyroid, and Lymph support tissue segmentation, ROI quantification, positivity review, spatial distribution, and multi-channel statistics.

Cell

Cyto, Cyto2, SAM, 2Dtracker, 3Dtimelapse, Nuclei, Nucleus01, Confluency, CM-CellCycle, LiveCell, CP, CPx, TN1-3, LC1-4, Single Cell Protein, 3DVD, LFcell02, and CellPaintingV3 support cell segmentation, tracking, morphology profiling, localization, and state review.

Material / Semicon / Animal / ML

Pore Analysis, Layer, Microridge, Mfiber1, Mfiber2, Wafer, Mouse Dynamics Tracking, and Pixel Classification support pore, layer, ridge, fiber, wafer, animal motion, and user-defined pixel-classification reviews.

Diagram grouping IAS imaging model families by use case
Pathology mode: ROI editing, visual similarity, and finding-candidate supportMore details

Pathology mode combines local pathology processing, ROI editing, vision-language assistance, visual similarity, and nuclei/cell segmentation support.

WSI / ROI

OpenSlide, tifffile, OpenCV, and LAB/HSV/RGB Magic Wand support tissue masks, tile heatmaps, overlays, and color-space ROI editing.

AI support

Qwen2.5-VL + LoRA assist, ResNet152 visual similarity, and DeepLIIF biomarker support help generate descriptions, hypotheses, similar-image candidates, and biomarker-support summaries.

Segmentation

checkpoint-gated tumor segmentation, StarDist H&E nuclei, Cellpose-SAM service, and InstanSeg service provide candidate segmentation for tumor regions, nuclei, and cells.

This is not a diagnostic function. Outputs are research and review support for specialist-led pathology review.

Diagram showing pathology mode support functions and review premise
FlowCyto: compensation, QC, gates, clustering, and statistics in one flowMore details

IAS connects FCS input, compensation, QC, gates, embedding, clustering, statistics, and reporting.

Compensation / QC

Compensation, spectral unmixing, PeacoQC, DataQC, doublet checks, and margin checks help review spillover, spectral overlap, abnormal events, flow-rate drift, doublets, and margin events.

Gate / Embedding

Gate editor, Boolean gates, UMAP, t-SNE, opt-SNE, and viSNE help preserve manual thresholds and inspect high-dimensional cytometry data.

Cluster / Statistics

FlowSOM, SPADE, CITRUS, population statistics, and marker summaries support population comparison, MFI review, figures, and reports.

Embeddings are visualizations; interpretation should be checked against marker expression and manual gates.

Workflow diagram from FCS input to FlowCyto statistics and report
Genomics: sequences, NGS, single-cell, CRISPR, and Multi-OmicsMore details

IAS organizes sequence similarity, alignment, variants, single-cell analysis, reference mapping, and multi-omics evidence by experiment.

Sequence / Variant

BLAST, MSA, Phylogeny, CRISPR, QC & Alignment, Variant Calling, Joint Genotyping, and Annotation connect sequence review to variant and annotation review.

Browser / Single-cell

Genome Browser and Single-cell Async support genomic-region inspection, variants, gene models, normalization, HVG, PCA, clustering, UMAP, and marker detection.

Advanced / Multi-Omics

Harmony, scGPT, cell annotation capability checks, and Multi-Omics connect batch correction, reference mapping, cell-type annotation candidates, expression, variants, phenotypes, and other modes.

Check genome build, QC, depth, population frequency, labeled references, batch effects, missingness, and unit alignment.

Diagram connecting genomics results with other modes by sample ID
MassSpec: peak detection, identification, quantification, MSI, and spectral similarityMore details

IAS connects raw/mzML/mgf/wiff inputs to peak features, identification, quantification, QC, database matching, reports, and multi-omics.

Metabolomics / Lipidomics

MS-DIAL, XCMS, MZmine, MS-FINDER, MS-CleanR, LipidSearch, and LipidBlast outputs are organized for candidate review and quantification.

Proteomics / MSI

MaxQuant, Proteome Discoverer, FragPipe, Mascot, Byonic, Spectronaut, DIA-NN, OpenSWATH, Prosit, SCiLS Lab, Cardinal, MSiReader, METASPACE, and OpenMSI outputs can be reviewed as part of the same workflow.

Target / AI / Multi-omics

MRM/SRM/PRM, MRMProbs, DeepNovo, Spec2Vec, MS2DeepScore, AlphaPept, mixOmics, MOFA(+), DIABLO, and OmicsNet outputs can be tied back to research decisions.

AI candidates should be verified with database matching, standards, MS/MS evidence, FDR, QC, blanks, and batch correction.

Workflow diagram from mass-spec raw input to peak review and report
Molecular Structure: structure prediction, docking, MD, and validation reportsMore details

IAS helps review the path from Sequence/PDB/Ligand to structure prediction, docking, MD, validation, and reports.

Structure prediction

Monomer and complex structure prediction, public structure retrieval, and pLDDT/PAE review are handled as review inputs.

Docking / MD

GNINA, AutoDock-family, LightDock path, OpenMM, and mdtraj support binding-pose candidates, scores, binding-site review, RMSD/RMSF, interactions, and solvent-condition review.

Validation / Extensions

Validation quality checks, reports, function annotation, spectrum prediction, knowledge graph, QM, and FEP scaffolds help organize quality and extension candidates.

Check confidence, pLDDT/PAE, protonation, box, charge, ligand preparation, force field, solvent, temperature, and simulation length.

Workflow diagram from sequence and ligand input to molecular validation report
Integrate / DB Manage: sample IDs, experiment history, and evidence maturityMore details

IAS connects imaging, genomics, mass spec, flow cytometry, molecular structure, and reports around a consistent sample ID.

Mapping

sample ID and provenance mapping connect sample IDs, experiments, files, and preprocessing history across modes.

Statistics / Cross-modal

compute-statistics, random-effects meta-analysis, and cross-modal review connect effect sizes, confidence intervals, heterogeneity, imaging features, gene expression, metabolites, and population ratios.

Report / DB

Gen Report, report history, evidence maturity, DB Manage, and Sample DB help preserve report context, input history, file references, mode estimation, and re-analysis paths.

For clinical research support, keeping the same sample ID across Imaging, Genomics, MassSpec, and FlowCyto is critical.

Hub diagram connecting analysis modes around sample ID
Support functions: Support Chat, Patho Chat, and Q&A HelpMore details

Support functions reduce uncertainty during analysis by connecting operation guidance, knowledge search, ROI questions, and help dialogs.

Support Chat

Support Chat connects operation guidance, inquiry handoff, knowledge search, and AI-answer support for Imaging, Genomics, FlowCyto, Molecular, MassSpec, and Integrate.

Patho Chat / ROI Pathology Chat

Patho Chat combines ROI crops, feature extraction, similarity candidates, and Qwen-family LLM support to provide finding candidates, differential candidates, and suggested checks under pathology-specialist review.

Q&A / Help

Q&A icons and Help screens reduce operation mistakes through tooltips, Quick Start, Help dialogs, shortcut explanations, and Support Chat / Patho Chat visibility controls.

Patho Chat does not replace pathology review. Outputs are confirmation support and hypothesis-generation support for selected ROIs.

Illustration connecting analysis screens to Support Chat and Patho Chat assistance

Five points to check during IAS evaluation

  1. Input typeWhether images, FCS, FASTQ/BAM/VCF/H5AD, mzML/raw, PDB/mmCIF, or integrated tables fit the target mode.
  2. Model or engine purposeWhat segmentation, tracking, annotation, clustering, docking, MD, or spectral matching output actually means.
  3. Output unitWhether the output is ROI, cell, nucleus, population, variant, peptide/protein, metabolite/lipid, structure, or cross-sample statistics.
  4. Validation itemsWhether QC, thresholds, confidence, FDR, reference databases, external standards, and specialist review remain visible.
  5. Support functionsWhether Support Chat, Patho Chat, and Q&A / Help give the right workflow guidance in context.

Check IAS fit with your own data

Your target data, analysis problem, and evaluation timing do not need to be fully organized. We can review the appropriate analysis modes and implementation path with you.

Demo consultation

Cobertura integral de métodos analíticos en investigación básica

Los métodos de investigación básica se unifican para que los equipos trabajen con flujos reproducibles en el mismo entorno.

Cobertura integral de métodos analíticos en investigación básica

Desarrollo adicional de IA propia y funciones

Añadimos IA y funciones de análisis adaptadas a sus objetivos para automatizar todo el proceso de investigación.

Desarrollo adicional de IA propia y funciones

Características de la plataforma IAS

Coordinar y gestionar todo el laboratorio

Coordinar y gestionar todo el laboratorio

Gestione datos, análisis e informes en un único sistema web.

Sistema web completo

Sistema web completo

Use la misma plataforma en colaboración y entornos remotos sin instalación local.

Soporte 24 horas mediante chat

Soporte 24 horas mediante chat

Facilita preguntas y comprobaciones durante el análisis.

Gestión robusta de datos

Gestión robusta de datos

Diseñado para gestión de datos, prevención de fugas y necesidades regulatorias.

Sugerencias de IA generativa

Sugerencias de IA generativa

Ayuda a descubrir puntos relevantes en imágenes y resultados.

Compatibilidad con más de 400 formatos

Compatibilidad con más de 400 formatos

Integra diversos formatos usados en entornos de investigación.

Opiniones de usuarios

Trabajo analítico estandarizado

Los procedimientos especializados se comparten con más facilidad y mejoran la reproducibilidad en colaboración remota.

Eficiencia en todo el laboratorio

La gestión central de múltiples formatos reduce el tiempo de análisis y elaboración de informes.

Compatibilidad con más de 400 formatos

Admite formatos únicos de imagen y análisis, y funciona como sistema integrado de análisis de datos.

Ejemplos de formatos de datos compatibles

Microscopy and bioimagingRepresentative research image formats from OME-TIFF, confocal, slide scanners, and electron microscopy.
  • .ome.tiff
  • .ome.tif
  • .ome.xml
  • .czi
  • .lsm
  • .lif
  • .nd2
  • .oib
  • .oif
  • .oir
  • .vsi
  • .svs
  • .ndpi
  • .qptiff
  • .dm3
  • .dm4
  • .mrc
  • .mrcs
General image, video, and documentsCommon image, video, tabular, HTML, and XML files used before and after analysis.
  • .tif
  • .tiff
  • .png
  • .jpg
  • .bmp
  • .gif
  • .avi
  • .mov
  • .csv
  • .txt
  • .xml
  • .html
  • .h5
  • .hdf
NGS and genomicsSequence, alignment, variant, and array-related data organized by experiment.
  • fastq
  • fasta
  • bam
  • vcf
  • cel
  • chp
  • arr
  • idat
Flow cytometry and qPCRCell population analysis, digital PCR, and instrument outputs with experiment metadata.
  • stilla
  • rdml
  • .pnl
  • .rdpnl
  • .exp
  • .xml
  • .csv
Mass spectrometry and chromatographyRaw data, converted data, and vendor formats used around mass spectrometry analysis.
  • mzml
  • raw
  • wiff
  • d
  • .spc
  • .std
  • .dat
  • .res
Molecular structure, materials, and QCMolecular structure, materials observation, semiconductor, and quality-control inspection outputs.
  • .cif
  • sdf
  • qip
  • eds
  • lmd
  • .sxm
  • .afm
  • .stp
  • .map
  • .rec

Consúltenos también por formatos que no figuran en la lista.

Compatibilidad con gestión de datos, prevención de fugas y regulación

Compatibilidad con gestión de datos, prevención de fugas y regulación

Apoya la gestión de datos considerando 21 CFR Part 11 y otros requisitos.

Herramientas de visualización ricas

Herramientas de visualización ricas

Permiten revisar resultados de análisis de forma intuitiva.

Borradores de informes y artículos

Borradores de informes y artículos

Ayuda a crear informes y manuscritos a partir de resultados.

Automatización completa del laboratorio

Automatización completa del laboratorio

Conecta análisis, gestión e informes para mejorar todo el flujo del laboratorio.

Ejemplos de aplicaciones

Each card separates the input data, the outputs IAS organizes, and the research decision it supports. Flow Cytometry, NGS, Molecular Structure, and MassSpec are treated as first-class analysis modes alongside Imaging.

Analogía de eficacia y toxicidad desconocidas

Analogía de eficacia y toxicidad desconocidas

Para descubrimiento de fármacos, toxicidad y exploración

IA infiere eficacia y toxicidad desconocidas al vincular parámetros específicos e información de enfermedades con más de 1000 parámetros de medición, más de 100 000 células y extracción de orgánulos.

Inputs
HCS images, Cell Painting images, tissue or cell images, treatment conditions
Outputs
Morphology features, clusters, regions of interest, compound and disease similarity
Decision use
Prioritize candidate compounds, flag toxicity signals, and plan follow-up conditions
Producción celular

Producción celular

Para terapia génica y células iPS

Soporta de extremo a extremo los procesos que requieren evaluación visual de aceptación desde I+D hasta producción y control de calidad de Stem Cells e iPS.

Inputs
FCS files, panel definitions, gating conditions, sample groups
Outputs
Population ratios, gate-level comparisons, abnormal population candidates, QC summaries
Decision use
Review cell-production lots, compare immune response, and catch quality drift earlier
Seguimiento dinámico y análisis de comportamiento grupal en animales pequeños

Seguimiento dinámico y análisis de comportamiento grupal en animales pequeños

Para ratones y modelos similares

Permite seguir cuerpos y extremidades de animales pequeños y analizar el comportamiento grupal sin verse afectado por día/noche o diferencias de pelaje.

Inputs
FASTQ/BAM/VCF files, expression tables, sample attributes, phenotype context
Outputs
Variant candidates, expression changes, annotations, cross-sample review views
Decision use
Shortlist genes, interpret group differences, and choose follow-up validation targets
Molecular Structure: 3D structure comparison

Molecular Structure: 3D structure comparison

Proteins, materials, and structural evaluation

Manage 3D structures, segmented regions, features, and candidate models so structural differences and regions of interest are easier to compare.

Inputs
PDB/mmCIF files, predicted structures, binding sites, candidate molecules or materials
Outputs
Structure overlays, difference regions, binding-site notes, comparison reports
Decision use
Review structure hypotheses, compare candidates, and prepare docking or materials evaluation
MassSpec: Spectral peak interpretation

MassSpec: Spectral peak interpretation

Metabolites, quality evaluation, and component comparison

Manage spectra, peaks, sample conditions, and comparison groups to support component review, quality differences, and reporting.

Inputs
mzML/mzXML files, peak lists, sample conditions, comparison groups or lots
Outputs
Peak candidates, component comparisons, quality differences, report annotations
Decision use
Confirm metabolite candidates, understand lot differences, and organize quality evidence
Sistema de análisis integrado IAS - LifeAnalytics